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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
22
ChIP-seq
4
DNase-seq
4
total RNA-seq
2
single cell RNA-seq
Assay category
41
DNA accessibility
22
DNA binding
6
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
35
February, 2023
22
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
56
bed narrowPeak
30
bam
23
bigWig
19
bigBed narrowPeak
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
69
Homo sapiens
Biosample type
67
tissue
cell line
2
primary cell
Organ
790
pancreas
651
connective tissue
479
adipose tissue
402
epithelium
339
liver
320
kidney
287
heart
169
brain
159
bone element
144
vasculature
139
blood vessel
107
limb
83
musculature of body
69
artery
58
eye
35
nerve
23
spleen
21
embryo
20
lung
18
ureter
16
skeleton
16
vein
8
blood
8
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
58
GRCh38
23
hg19
Lab
69
AMP-T2D consortium
organ_slims!
esophagus
target.investigated_as!
narrow histone mark
biosample_type!
cell line
BIOSAMPLE
ASSAY
69 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
tissue
coronary artery
36
3
2
1
tibial artery
1
19
2
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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