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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
28
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
28
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
20
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
Available data
96
bam
79
bigWig
68
bed narrowPeak
58
tsv
19
bigBed narrowPeak
6
tagAlign
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
131
Homo sapiens
Biosample type
66
cell line
63
tissue
2
primary cell
Organ
850
pancreas
720
liver
624
connective tissue
473
adipose tissue
456
epithelium
323
heart
261
kidney
197
vasculature
194
blood vessel
159
bone element
134
brain
131
artery
71
limb
68
blood
68
bodily fluid
54
eye
49
musculature of body
33
nerve
27
embryo
22
spleen
20
lung
16
skeleton
14
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
131
AMP
Genome assembly (visualization)
118
GRCh38
83
hg19
Lab
131
AMP-T2D consortium
organ_slims!
esophagus
target.investigated_as!
narrow histone mark
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
131 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
3
tibial artery
1
1
19
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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