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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
35
DNA accessibility
26
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
19
August, 2017
6
July, 2019
5
May, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
51
bigWig
49
bed narrowPeak
45
bam
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
74
Homo sapiens
Biosample type
66
tissue
8
primary cell
Organ
538
liver
394
pancreas
274
epithelium
214
kidney
187
heart
170
connective tissue
145
brain
143
vasculature
138
blood vessel
100
limb
97
bone element
78
adipose tissue
77
artery
74
musculature of body
68
blood
68
bodily fluid
39
eye
30
nerve
23
spleen
18
ureter
16
vein
15
embryo
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
56
hg19
42
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
organ_slims!
esophagus
target.investigated_as!
narrow histone mark
assay_slims!
Transcription
BIOSAMPLE
ASSAY
74 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
15
4
1
1
muscle of leg
13
5
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
5
skeletal muscle cell
1
1
1
See all biosamples
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