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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1648
ChIP-seq
1111
total RNA-seq
351
ATAC-seq
289
single cell RNA-seq
200
DNase-seq
RNA microarray
73
snATAC-seq
52
pCHi-C
25
Hi-C
24
WGBS
18
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
DNA methylation
Date released
12
July, 2019
6
August, 2017
Available data
16
bed bedMethyl
16
bigBed bedMethyl
4
fastq
Organism
18
Homo sapiens
Biosample type
9
primary cell
9
tissue
Organ
6
epithelium
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
pancreas
1
connective tissue
eye
1
pericardium
1
vasculature
Project
18
AMP
Genome assembly (visualization)
16
hg19
Lab
18
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
eye
pancreas
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
18 results
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RRBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 4 more…
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
kidney
1
liver
1
+ See 1 more…
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