Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
865
ChIP-seq
232
ATAC-seq
175
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
865
DNA binding
439
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
213
October, 2019
195
August, 2017
160
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
73
August, 2021
54
February, 2023
50
May, 2020
48
December, 2017
39
May, 2022
31
March, 2020
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
981
bam
914
bed narrowPeak
812
bigWig
558
bigBed narrowPeak
274
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1464
Homo sapiens
Biosample type
1473
tissue
647
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
244
brain
214
pancreas
187
liver
184
kidney
164
heart
120
blood vessel
120
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1439
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
898
GRCh38
807
hg19
Lab
1310
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
eye
assay_slims!
Transcription
BIOSAMPLE
ASSAY
1473 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
69
67
1
7
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
+ See 156 more…
See all biosamples
Download