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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
894
total RNA-seq
720
ChIP-seq
174
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
916
Transcription
720
DNA binding
242
DNA accessibility
17
DNA methylation
Target of assay
464
histone modification
463
histone
241
narrow histone mark
222
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
160
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1895
bam
1758
bigWig
1043
tsv
952
bed narrowPeak
558
bigBed narrowPeak
377
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
1888
Homo sapiens
Biosample type
1895
tissue
605
primary cell
577
cell line
289
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
426
pancreas
287
liver
226
brain
130
heart
114
limb
98
kidney
86
blood vessel
86
vasculature
66
bone element
42
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
eye
1
pituitary gland
Project
1895
AMP
Genome assembly (visualization)
1691
GRCh38
1636
hg19
Lab
1870
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
eye
month_released!
March, 2020
BIOSAMPLE
ASSAY
1895 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
28
1
38
6
1
liver
146
122
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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