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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ChIP-seq
15
ATAC-seq
8
total RNA-seq
4
DNase-seq
1
Hi-C
Assay category
193
DNA binding
19
DNA accessibility
8
Transcription
1
3D chromatin structure
Target of assay
166
histone
166
histone modification
127
narrow histone mark
39
broad histone mark
27
control
Date released
545
February, 2021
284
August, 2017
229
August, 2021
221
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
64
February, 2023
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
186
bam
160
bigWig
151
bed narrowPeak
49
tagAlign
47
bigBed narrowPeak
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
221
Homo sapiens
Biosample type
221
tissue
34
primary cell
30
cell line
8
in vitro differentiated cells
Organ
86
brain
69
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
eye
8
heart
6
liver
4
gonad
4
kidney
4
ovary
3
pancreas
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
221
AMP
Genome assembly (visualization)
163
hg19
161
GRCh38
Lab
221
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
eye
BIOSAMPLE
ASSAY
221 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
tissue
tibial nerve
35
1
4
2
islet of Langerhans
19
12
tibial artery
23
1
2
heart
5
2
1
brain
5
1
liver
5
1
kidney
4
superior frontal gyrus
4
central medial thalamic nucleus
3
middle temporal gyrus
3
angular gyrus
2
anterior cingulate gyrus
2
cerebellum (Hemisphere)
2
gyrus rectus
2
medial globus pallidus
2
middle frontal gyrus
2
occipital pole
2
posterior cingulate gyrus
2
precuneus cortex
2
primary motor cortex
2
putamen
2
secondary auditory cortex
2
superior parietal cortex
2
supramarginal gyrus
2
white matter
2
adipose tissue
1
agranular insular cortex
1
amygdala
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
body of caudate nucleus
1
brodmann area 43
1
claustrum of brain
1
cuneus
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dorsal plus ventral thalamus
1
external globus pallidus
1
fastigial nucleus
1
frontal pole
1
head of caudate nucleus
1
hippocampal gyrus
1
hypothalamus
1
inferior frontal gyrus
1
inferior temporal gyrus
1
insular gyrus
1
lateral hypothalamic area
1
lateral occipital gyrus
1
lateral septal nucleus
1
layer of hippocampus
1
lingual gyrus
1
locus coeruleus
1
mammillary body
1
medial dorsal nucleus of thalamus
1
medial geniculate nucleus
1
medial segment of precentral gyrus
1
midbrain tectum
1
myelencephalon
1
nucleus accumbens
1
olivary body
1
orbital gyrus
1
paraterminal gyrus
1
pineal body
1
piriform cortex
1
pituitary gland
1
planum polare
1
planum temporale
1
pons
1
postcentral gyrus
1
primary somatosensory cortex
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
subiculum
1
substantia nigra
1
substantia nigra pars reticulata
1
subthalamic nucleus
1
superior occipital gyrus
1
suprachiasmatic nucleus
1
temporal pole
1
transverse temporal gyrus
1
uncus of parahippocampal gyrus
1
ventral anterior nucleus of thalamus
1
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