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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
DNase-seq
34
ChIP-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
201
DNA accessibility
34
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
183
June, 2019
26
August, 2017
9
November, 2018
8
October, 2019
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
May, 2022
1
November, 2020
Available data
3094
bam
2864
bigWig
1612
bed narrowPeak
1464
tsv
1217
fastq
1019
bigBed narrowPeak
358
tagAlign
317
bed broadPeak
280
bigBed broadPeak
244
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
244
Homo sapiens
Biosample type
202
tissue
36
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
21
epithelium
18
ureter
14
connective tissue
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
eye
2
nerve
2
vein
1
spleen
Project
244
AMP
Genome assembly (visualization)
235
GRCh38
221
hg19
Lab
242
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
organ_slims!
eye
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
244 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 41 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 18 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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