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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
DNase-seq
113
ChIP-seq
2
ATAC-seq
Assay category
195
DNA accessibility
113
DNA binding
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
177
June, 2019
70
November, 2017
39
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2792
bam
2553
bigWig
1669
bed narrowPeak
1257
fastq
1117
tsv
1008
bigBed narrowPeak
376
tagAlign
308
bed broadPeak
272
bigBed broadPeak
242
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
302
Homo sapiens
Biosample type
207
tissue
59
cell line
42
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
308
AMP
Genome assembly (visualization)
285
hg19
269
GRCh38
Lab
306
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
eye
connective tissue
BIOSAMPLE
ASSAY
308 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 13 more…
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