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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
22
ATAC-seq
16
DNase-seq
1
FAIRE-seq
Assay category
39
DNA accessibility
34
DNA binding
Target of assay
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
15
June, 2019
14
December, 2017
14
October, 2019
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
Available data
313
bam
298
bigWig
257
fastq
154
tsv
136
bed narrowPeak
80
zippedFastqFolder
73
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
7
tagAlign
6
hic
5
bed bedMethyl
5
bedpe bed3+
5
bigBed bedMethyl
3
cool
2
hdf5
1
tar
Organism
73
Homo sapiens
Biosample type
58
primary cell
14
in vitro differentiated cells
1
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
eye
Project
73
AMP
Genome assembly (visualization)
72
GRCh38
67
hg19
Lab
73
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
eye
BIOSAMPLE
ASSAY
73 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
+ See 11 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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