Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
735
ChIP-seq
123
total RNA-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
735
DNA binding
123
Transcription
42
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
421
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
229
August, 2017
87
November, 2018
67
December, 2017
58
October, 2018
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2752
bam
2525
bigWig
1464
bed narrowPeak
1325
tsv
921
fastq
902
bigBed narrowPeak
298
tagAlign
270
bed broadPeak
233
bed bed3+
233
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
914
Homo sapiens
Biosample type
426
cell line
primary cell
350
tissue
141
in vitro differentiated cells
4
stem cell
Organ
438
liver
213
pancreas
98
connective tissue
59
blood
59
bodily fluid
44
adipose tissue
27
embryo
24
spleen
19
epithelium
12
brain
2
musculature of body
Project
921
AMP
Genome assembly (visualization)
754
hg19
694
GRCh38
5
hg18
Lab
895
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent control
4
inconsistent ontology term
Audit category:
45
missing controlled_by
Audit category:
51
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
organ_slims!
eye
audit.ERROR.category!
inconsistent control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
921 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2
360
5
1
1
GM12878
59
tissue
islet of Langerhans
28
103
20
1
1
liver
40
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
+ See 8 more…
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
See all biosamples
Download