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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
30
DNase-seq
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
182
DNA accessibility
161
Transcription
159
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
122
histone
122
histone modification
64
narrow histone mark
58
broad histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
51
June, 2019
48
July, 2018
43
April, 2018
34
October, 2019
30
July, 2019
20
May, 2021
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
425
bam
385
bigWig
240
fastq
178
bed narrowPeak
168
tsv
106
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
34
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
519
Homo sapiens
Biosample type
2369
tissue
615
cell line
519
primary cell
340
in vitro differentiated cells
8
stem cell
Organ
254
epithelium
194
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
eye
2
adipose tissue
2
artery
1
pericardium
Project
519
AMP
Genome assembly (visualization)
406
hg19
342
GRCh38
Lab
519
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
eye
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
519 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
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