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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
13
DNA binding
2
DNA accessibility
Target of assay
6
histone
6
histone modification
4
broad histone mark
4
control
3
other context
3
other post-translational modification
3
transcription factor
2
narrow histone mark
Date released
December, 2018
7
January, 2019
7
November, 2018
1
March, 2020
1
October, 2017
Available data
17
bam
17
fastq
13
bigWig
11
bed narrowPeak
10
bigBed narrowPeak
2
bed bedMethyl
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
16
Homo sapiens
Biosample type
16
tissue
Organ
940
pancreas
787
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
eye
43
nerve
42
blood
42
bodily fluid
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
16
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
16
AMP-T2D consortium
organ_slims!
eye
month_released!
December, 2018
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
13
1
1
1
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