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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
total RNA-seq
126
ChIP-seq
91
ATAC-seq
47
WGBS
37
single cell RNA-seq
18
DNase-seq
8
Hi-C
6
MeRIP-seq
5
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
129
Transcription
Date released
37
February, 2023
26
February, 2021
26
September, 2018
16
September, 2020
6
May, 2021
5
December, 2019
5
July, 2019
3
October, 2019
2
March, 2020
2
October, 2018
1
November, 2019
Available data
81
fastq
76
bam
76
bigWig
76
tsv
Organism
129
Homo sapiens
Biosample type
93
primary cell
34
cell line
2
in vitro differentiated cells
Organ
474
connective tissue
398
adipose tissue
283
pancreas
189
liver
131
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
74
AMP
53
HPAP
2
T1D
Genome assembly (visualization)
76
GRCh38
76
hg19
Lab
76
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
organ_slims!
eye
month_released!
July, 2018
BIOSAMPLE
ASSAY
129 results
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total RNA-seq
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
hepatocyte
5
pancreatic acinar cell
4
pancreatic ductal cell
4
+ See 7 more…
cell line
EndoC_BH1
33
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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