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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
72
ChIP-seq
33
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
114
Transcription
72
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
280
bam
265
bigWig
224
fastq
136
bed narrowPeak
121
tsv
80
zippedFastqFolder
73
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
7
tagAlign
6
hic
5
bed bedMethyl
5
bedpe bed3+
5
bigBed bedMethyl
3
cool
2
hdf5
1
tar
Organism
224
Homo sapiens
Biosample type
205
primary cell
19
in vitro differentiated cells
Organ
465
liver
432
pancreas
224
epithelium
99
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
155
AMP
69
HPAP
Genome assembly (visualization)
148
GRCh38
140
hg19
Lab
155
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
organ_slims!
eye
month_released!
July, 2018
BIOSAMPLE
ASSAY
224 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
13
5
13
6
pancreatic beta cell
21
13
3
10
pancreatic ductal cell
4
13
6
4
pancreatic acinar cell
4
8
4
5
pancreatic delta cell
7
+ See 4 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
See all biosamples
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