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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
DNase-seq
108
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
Assay category
185
DNA accessibility
108
DNA binding
4
Transcription
Target of assay
78
histone
78
histone modification
45
broad histone mark
33
narrow histone mark
26
control
9
transcription factor
7
RNA binding protein
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
293
October, 2019
211
June, 2019
200
May, 2022
174
February, 2023
168
July, 2018
120
May, 2019
107
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
296
bam
274
bigWig
271
bed narrowPeak
269
bigBed narrowPeak
184
bed bed3+
184
bed broadPeak
184
bigBed broadPeak
4
tsv
Organism
307
Homo sapiens
Biosample type
244
tissue
57
primary cell
6
cell line
Organ
104
kidney
92
heart
43
musculature of body
32
limb
30
brain
26
epithelium
24
connective tissue
18
ureter
14
pancreas
eye
7
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
307
AMP
Genome assembly (visualization)
274
GRCh38
252
hg19
Lab
297
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
32
inconsistent ontology term
organ_slims!
eye
BIOSAMPLE
ASSAY
307 results
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Clear Filters
DNase-seq
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
tissue
heart left ventricle
3
35
kidney
13
23
heart
18
9
muscle of arm
17
heart right ventricle
1
13
+ See 34 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
osteoblast
1
4
1
cardiac muscle cell
1
3
+ See 17 more…
cell line
EndoC_BH1
6
See all biosamples
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