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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
89
total RNA-seq
3
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
132
DNA binding
89
Transcription
5
DNA accessibility
3
DNA methylation
Target of assay
85
histone modification
84
histone
45
broad histone mark
45
transcription factor
38
narrow histone mark
6
RNA binding protein
2
chromatin remodeller
2
control
Date released
571
February, 2021
272
November, 2017
229
August, 2017
191
October, 2019
170
May, 2020
144
June, 2019
132
May, 2021
116
July, 2018
93
May, 2019
77
December, 2017
71
November, 2018
65
April, 2019
60
July, 2019
59
November, 2019
57
August, 2021
45
October, 2018
39
May, 2022
31
February, 2018
31
March, 2020
30
December, 2018
26
January, 2019
18
February, 2023
13
October, 2017
6
April, 2018
3
January, 2018
3
March, 2019
2
September, 2017
1
May, 2023
Available data
224
bigWig
209
fastq
206
bam
109
bed narrowPeak
89
tsv
33
bed bed3+
27
bed broadPeak
26
tagAlign
23
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bigBed broadPeak
Organism
223
Homo sapiens
Biosample type
180
tissue
49
in vitro differentiated cells
primary cell
Organ
130
pancreas
64
connective tissue
20
liver
15
adipose tissue
15
musculature of body
Project
229
AMP
Genome assembly (visualization)
229
hg19
207
GRCh38
Lab
229
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
organ_slims!
eye
biosample_type!
primary cell
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
total RNA-seq
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
18
1
skeletal muscle tissue
13
2
pancreas
12
white adipose tissue
12
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in vitro differentiated cells
adipocyte
48
1
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