Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
7
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
pCHi-C
Assay category
88
DNA binding
12
Transcription
10
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
45
May, 2019
8
July, 2019
6
August, 2021
3
June, 2019
3
March, 2020
3
November, 2017
2
February, 2020
Available data
104
bam
86
bigWig
76
bed narrowPeak
74
bigBed narrowPeak
12
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
117
Homo sapiens
Biosample type
88
tissue
29
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
117
AMP
Genome assembly (visualization)
87
hg19
80
GRCh38
Lab
117
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
eye
heart
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
117 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
tissue
tibial artery
23
2
1
1
aorta
13
4
1
1
2
ascending aorta
16
1
2
thoracic aorta
16
2
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
Download