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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ATAC-seq
173
DNase-seq
Assay category
1331
Transcription
1151
DNA binding
360
DNA accessibility
11
DNA methylation
2
3D chromatin structure
Date released
153
June, 2019
74
August, 2021
26
November, 2019
14
October, 2019
14
September, 2018
13
May, 2021
11
May, 2023
10
February, 2021
9
November, 2018
8
October, 2017
7
August, 2017
7
August, 2020
5
September, 2017
3
September, 2020
2
July, 2019
2
March, 2019
2
November, 2020
Available data
334
bed narrowPeak
272
bam
220
bigWig
197
bigBed narrowPeak
172
bed broadPeak
171
bigBed broadPeak
170
bed bed3+
64
xls
53
fastq
2
bed bed3
Organism
360
Homo sapiens
Biosample type
266
tissue
72
primary cell
18
in vitro differentiated cells
4
cell line
Organ
154
kidney
heart
67
pancreas
57
vasculature
55
blood vessel
51
epithelium
49
artery
44
limb
34
brain
33
musculature of body
18
ureter
14
connective tissue
8
bone element
8
liver
8
skeleton
5
adipose tissue
eye
3
nerve
2
spleen
2
vein
Project
350
AMP
10
HPAP
Genome assembly (visualization)
383
hg19
360
GRCh38
Lab
272
AMP-T2D consortium
75
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
14
inconsistent ontology term
1
inconsistent replicate
organ_slims!
eye
heart
BIOSAMPLE
ASSAY
360 results
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Clear Filters
ATAC-seq
DNase-seq
tissue
kidney
75
13
islet of Langerhans
22
1
muscle of arm
17
brain
14
muscle of leg
13
+ See 45 more…
primary cell
monocyte
13
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 22 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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