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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1608
ChIP-seq
1111
total RNA-seq
351
ATAC-seq
289
single cell RNA-seq
200
DNase-seq
87
RNA microarray
73
snATAC-seq
52
pCHi-C
25
Hi-C
24
WGBS
18
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA accessibility
Date released
179
June, 2019
9
October, 2019
7
November, 2018
4
August, 2017
1
November, 2020
Available data
197
bam
197
bed narrowPeak
197
bigBed narrowPeak
197
bigWig
195
bed broadPeak
195
bigBed broadPeak
193
bed bed3+
9
fastq
Organism
200
Homo sapiens
Biosample type
168
tissue
30
primary cell
1
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
pancreas
6
liver
4
artery
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
200
AMP
Genome assembly (visualization)
195
GRCh38
176
hg19
Lab
200
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
eye
pancreas
BIOSAMPLE
ASSAY
200 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 17 more…
cell line
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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