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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
Assay category
481
Transcription
143
DNA binding
34
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
78
histone
78
histone modification
44
broad histone mark
40
transcription factor
35
control
33
narrow histone mark
RNA binding protein
2
chromatin remodeller
Date released
113
August, 2017
18
October, 2018
11
June, 2019
1
October, 2019
Available data
92
bam
81
fastq
65
bigWig
48
bed narrowPeak
22
tagAlign
11
bed bed3+
9
bigBed narrowPeak
1
bed broadPeak
Organism
143
Homo sapiens
Biosample type
69
tissue
63
in vitro differentiated cells
11
primary cell
Organ
494
liver
215
brain
209
pancreas
143
connective tissue
121
epithelium
97
vasculature
95
blood vessel
88
heart
68
adipose tissue
66
limb
50
blood
50
bodily fluid
49
kidney
39
musculature of body
35
nerve
33
artery
22
embryo
20
spleen
17
vein
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
143
AMP
Genome assembly (visualization)
66
hg19
65
GRCh38
Lab
143
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
eye
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
white adipose tissue
12
subcutaneous adipose tissue
10
omental fat pad
8
adipose tissue
2
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in vitro differentiated cells
adipocyte
63
primary cell
mesenchymal stem cell
7
cardiac fibroblast
4
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