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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
15
small RNA-seq
13
RRBS
12
WGBS
7
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
46
Transcription
25
DNA methylation
8
DNA accessibility
7
3D chromatin structure
Target of assay
control
Date released
388
May, 2021
335
November, 2017
318
May, 2020
302
August, 2021
257
February, 2021
250
August, 2017
250
October, 2019
200
May, 2022
189
June, 2019
166
July, 2018
160
February, 2023
97
May, 2019
86
July, 2019
81
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
62
March, 2020
59
September, 2020
58
November, 2019
47
April, 2018
47
September, 2023
42
October, 2018
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
22
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
14
May, 2023
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
November, 2020
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
65
bigWig
63
bam
46
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
86
Homo sapiens
Biosample type
67
tissue
19
primary cell
Organ
25
heart
connective tissue
15
brain
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
eye
Project
86
AMP
Genome assembly (visualization)
69
hg19
60
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
eye
connective tissue
target.investigated_as!
control
BIOSAMPLE
ASSAY
86 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
+ See 24 more…
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
astrocyte of the cerebellum
1
+ See 10 more…
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