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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
76
total RNA-seq
15
ChIP-seq
12
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
76
Transcription
15
DNA binding
12
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
control
4
broad histone mark
3
transcription factor
Date released
150
February, 2021
10
February, 2018
9
December, 2017
8
August, 2021
8
February, 2023
3
May, 2021
1
January, 2018
Available data
95
bam
88
txt
87
bigWig
72
tsv
22
bed narrowPeak
20
fastq
4
bed bed3
2
bed bed3+
Organism
189
Homo sapiens
Biosample type
158
tissue
22
in vitro differentiated cells
8
cell line
1
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
188
AMP
1
T1D
Genome assembly (visualization)
98
hg19
94
GRCh38
1
hg18
Lab
188
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
eye
target.investigated_as!
control
BIOSAMPLE
ASSAY
189 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
4
13
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
megakaryocyte
1
See all biosamples
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