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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
ATAC-seq
2
WGBS
1
pCHi-C
Assay category
36
DNA binding
5
DNA accessibility
5
Transcription
2
DNA methylation
Target of assay
30
histone
30
histone modification
20
broad histone mark
control
10
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
31
October, 2019
6
January, 2019
6
November, 2018
3
December, 2018
1
February, 2020
1
March, 2020
1
October, 2017
Available data
47
bam
47
bigWig
41
bed narrowPeak
39
bigBed narrowPeak
16
fastq
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
49
Homo sapiens
Biosample type
49
tissue
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
47
GRCh38
45
hg19
Lab
49
AMP-T2D consortium
organ_slims!
eye
target.investigated_as!
control
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
tissue
tibial nerve
24
5
2
1
spleen
12
1
1
2
1
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