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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
Assay category
47
DNA binding
Target of assay
29
histone
29
histone modification
18
transcription factor
15
broad histone mark
14
narrow histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
18
November, 2017
15
August, 2017
11
December, 2017
2
February, 2018
1
November, 2018
October, 2018
Available data
47
bam
47
bigWig
47
fastq
45
bed narrowPeak
22
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
47
Homo sapiens
Biosample type
19
cell line
17
in vitro differentiated cells
5
tissue
4
primary cell
2
stem cell
Organ
20
liver
8
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
47
AMP
Genome assembly (visualization)
47
hg19
44
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
55
inconsistent control read length
inconsistent control run_type
4
inconsistent assembly
organ_slims!
gonad
audit.WARNING.category!
inconsistent control run_type
month_released!
October, 2018
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
cell line
HepG2
19
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
stem cell
hESC
2
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