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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
108
single cell RNA-seq
88
ChIP-seq
28
snATAC-seq
21
ATAC-seq
17
pCHi-C
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
309
Transcription
88
DNA binding
49
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
May, 2020
19
April, 2020
18
February, 2021
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
Available data
196
bigWig
186
bam
142
fastq
104
tsv
88
bed narrowPeak
84
tagAlign
19
zippedFastqFolder
1
hic
Organism
470
Homo sapiens
Biosample type
365
primary cell
97
tissue
11
cell line
2
stem cell
Organ
103
pancreas
73
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
244
T1D
160
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
197
GRCh38
186
hg19
Lab
236
Kyle Gaulton, UCSD
160
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
audit script error
9
inconsistent ontology term
organ_slims!
gonad
award.project!
AMP
audit.ERROR.category!
audit script error
month_released!
May, 2022
BIOSAMPLE
ASSAY
475 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
WGBS
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
7
6
Langerhans cell
52
exocrine cell
39
pancreatic beta cell
11
3
+ See 36 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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