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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
18
snATAC-seq
pCHi-C
11
ATAC-seq
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
88
DNA binding
29
DNA accessibility
7
Transcription
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
85
May, 2021
23
February, 2023
16
January, 2021
5
March, 2020
Available data
186
bam
186
bigWig
tsv
88
bed narrowPeak
84
tagAlign
Organism
129
Homo sapiens
Biosample type
92
primary cell
30
tissue
7
cell line
Organ
32
pancreas
8
blood
8
bodily fluid
2
epithelium
Project
2783
AMP
318
HPAP
129
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
123
Kyle Gaulton, UCSD
6
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
gonad
files.file_type!
tsv
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
snATAC-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
2
6
11
7
pancreas
4
cell line
EndoC_BH1
2
3
2
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