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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
2
pCHi-C
Assay category
3
3D chromatin structure
Date released
3
October, 2022
2
March, 2020
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1599
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Organ
3
epithelium
3
pancreas
Project
3
HPAP
2
AMP
Genome assembly (visualization)
5
hg19
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
3
audit script error
2
inconsistent ontology term
organ_slims!
gonad
BIOSAMPLE
ASSAY
5 results
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Hi-C
pCHi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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