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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
20
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
DNA accessibility
20
DNA binding
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
96
May, 2021
45
May, 2020
10
February, 2023
6
May, 2022
Available data
102
bam
101
bigWig
96
tsv
6
fastq
6
txt
2
bed bed3+
Organism
157
Homo sapiens
Biosample type
117
primary cell
22
in vitro differentiated cells
13
tissue
5
cell line
Organ
12
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
123
T1D
34
AMP
Genome assembly (visualization)
101
hg19
96
GRCh38
Lab
2505
AMP-T2D consortium
227
Klaus Kaestner, Upenn
157
Kyle Gaulton, UCSD
61
Katalin Susztak, Upenn
47
KPMP
34
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
organ_slims!
gonad
assay_slims!
DNA accessibility
target.investigated_as!
histone
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
in vitro differentiated cells
embryonic stem cell
5
17
tissue
islet of Langerhans
11
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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