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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
86
ChIP-seq
76
snATAC-seq
46
total RNA-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
191
Transcription
87
DNA accessibility
86
DNA binding
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
101
May, 2021
62
February, 2023
54
May, 2022
47
September, 2023
40
September, 2020
39
February, 2021
19
April, 2020
16
January, 2021
5
March, 2023
4
March, 2020
Available data
182
bam
182
bigWig
100
fastq
tsv
86
bed narrowPeak
84
tagAlign
73
zippedFastqFolder
1
hic
Organism
382
Homo sapiens
Biosample type
281
primary cell
97
tissue
7
cell line
2
stem cell
Organ
178
pancreas
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
172
HPAP
144
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
87
GRCh38
86
hg19
Lab
172
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
organ_slims!
gonad
epithelium
files.file_type!
tsv
award.project!
AMP
BIOSAMPLE
ASSAY
387 results
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single cell RNA-seq
ChIP-seq
snATAC-seq
total RNA-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
monocyte
84
1
exocrine cell
39
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
+ See 14 more…
tissue
kidney
47
islet of Langerhans
2
6
7
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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