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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
76
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
single cell RNA-seq
Assay category
90
Transcription
78
DNA accessibility
Date released
715
February, 2021
406
November, 2017
404
August, 2017
399
May, 2021
341
May, 2020
318
August, 2021
289
October, 2019
211
June, 2019
200
May, 2022
173
February, 2023
168
July, 2018
120
May, 2019
107
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
76
fastq
38
bed narrowPeak
12
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
3
bigWig
Organism
173
Homo sapiens
Biosample type
88
primary cell
64
tissue
16
in vitro differentiated cells
5
cell line
Organ
55
pancreas
51
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
eye
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
76
HPAP
74
AMP
23
T1D
Genome assembly (visualization)
35
GRCh38
18
hg19
Lab
76
Klaus Kaestner, Upenn
71
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
organ_slims!
gonad
eye
BIOSAMPLE
ASSAY
173 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
tissue
coronary artery
35
islet of Langerhans
5
11
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 4 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
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