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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
14
total RNA-seq
Assay category
69
DNA binding
14
Transcription
Target of assay
54
transcription factor
12
histone
12
histone modification
10
RNA binding protein
10
chromatin remodeller
8
narrow histone mark
4
broad histone mark
1
control
Date released
27
December, 2018
15
January, 2019
12
November, 2018
10
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
Available data
83
bam
82
bigWig
73
fastq
68
bed narrowPeak
54
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
83
Homo sapiens
Biosample type
62
cell line
21
in vitro differentiated cells
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
83
AMP
Genome assembly (visualization)
84
hg19
83
GRCh38
1
hg18
Lab
83
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
3
inconsistent control read length
organ_slims!
gonad
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
GM12878
54
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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