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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
64
DNA binding
14
Transcription
9
DNA accessibility
Target of assay
40
transcription factor
12
histone
12
histone modification
10
control
8
narrow histone mark
4
RNA binding protein
4
broad histone mark
4
chromatin remodeller
Date released
27
December, 2018
January, 2019
15
November, 2018
13
December, 2017
13
February, 2018
8
August, 2021
8
January, 2021
2
January, 2018
2
May, 2021
Available data
78
bam
69
bigWig
69
fastq
53
bed narrowPeak
39
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
88
Homo sapiens
Biosample type
51
cell line
29
in vitro differentiated cells
8
primary cell
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
8
T1D
Genome assembly (visualization)
69
hg19
68
GRCh38
1
hg18
Lab
80
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
gonad
month_released!
January, 2019
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
42
1
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
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