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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
13
ATAC-seq
8
snATAC-seq
4
total RNA-seq
Assay category
50
DNA binding
21
DNA accessibility
4
Transcription
Target of assay
51
transcription factor
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
25
December, 2018
13
November, 2018
12
January, 2019
8
February, 2021
8
February, 2023
8
January, 2021
1
January, 2018
Available data
58
bam
52
bed narrowPeak
50
fastq
45
bigWig
44
bigBed narrowPeak
4
bed bed3
4
txt
Organism
75
Homo sapiens
Biosample type
51
cell line
16
tissue
8
primary cell
Organ
937
pancreas
733
liver
674
connective tissue
516
epithelium
486
adipose tissue
382
heart
351
kidney
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
67
AMP
8
T1D
Genome assembly (visualization)
57
hg19
52
GRCh38
Lab
67
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
organ_slims!
gonad
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
cell line
GM12878
50
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
primary cell
peripheral blood mononuclear cell
8
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