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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
DNase-seq
77
ChIP-seq
27
ATAC-seq
5
FAIRE-seq
Assay category
239
DNA accessibility
77
DNA binding
Target of assay
histone
371
histone modification
232
broad histone mark
139
narrow histone mark
77
transcription factor
32
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
191
June, 2019
33
December, 2017
17
November, 2018
15
October, 2018
14
September, 2018
12
August, 2017
10
October, 2019
5
April, 2019
5
May, 2019
5
September, 2017
3
December, 2018
3
November, 2017
2
July, 2019
1
November, 2020
Available data
2061
bam
1816
bigWig
1480
tsv
718
fastq
598
bed narrowPeak
316
bigBed narrowPeak
245
bed bed3+
212
bed broadPeak
210
bigBed broadPeak
160
txt
153
zippedFastqFolder
68
tagAlign
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
Organism
316
Homo sapiens
Biosample type
cell line
249
tissue
62
primary cell
5
in vitro differentiated cells
Organ
81
kidney
46
epithelium
43
liver
41
pancreas
38
heart
36
brain
36
limb
33
musculature of body
19
connective tissue
18
ureter
17
vasculature
14
blood vessel
9
adipose tissue
7
spleen
5
artery
5
eye
3
vein
2
nerve
Project
316
AMP
Genome assembly (visualization)
305
GRCh38
293
hg19
Lab
316
AMP-T2D consortium
Audit category:
27
inconsistent control
7
inconsistent ontology term
organ_slims!
gonad
target.investigated_as!
histone
biosample_type!
cell line
BIOSAMPLE
ASSAY
316 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
FAIRE-seq
tissue
liver
2
33
heart
18
muscle of arm
17
brain
14
kidney
13
1
+ See 43 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
cardiac fibroblast
3
1
pancreatic ductal cell
4
+ See 22 more…
in vitro differentiated cells
adipocyte
1
2
hepatocyte
2
See all biosamples
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