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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
total RNA-seq
4
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
15
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
32
August, 2021
2
March, 2019
Available data
11
bed narrowPeak
11
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
34
Homo sapiens
Biosample type
30
cell line
4
tissue
Organ
28
liver
4
pancreas
2
kidney
Project
34
AMP
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
2760
AMP-T2D consortium
324
Klaus Kaestner, Upenn
204
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Bing Ren, UCSD
19
Xin Sun, UCSD
6
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
organ_slims!
gonad
target.investigated_as!
histone
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
34 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
15
9
2
1
1
HEK293T
2
tissue
islet of Langerhans
1
2
1
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