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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
74
total RNA-seq
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
88
Transcription
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Date released
647
February, 2021
291
May, 2020
231
May, 2021
200
May, 2022
184
August, 2021
169
February, 2023
168
July, 2018
157
June, 2019
115
August, 2017
83
July, 2019
69
October, 2019
59
September, 2020
54
March, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
22
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
76
bed narrowPeak
64
xls
57
txt
31
tsv
25
bam
17
bigWig
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
183
Homo sapiens
Biosample type
137
tissue
26
cell line
21
in vitro differentiated cells
Organ
130
kidney
heart
13
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
184
AMP
Genome assembly (visualization)
89
GRCh38
31
hg19
Lab
128
Katalin Susztak, Upenn
34
AMP-T2D consortium
18
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
heart
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
184 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
cell line
HepG2
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
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