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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
7
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
12
Transcription
10
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Date released
8
July, 2019
7
October, 2019
6
August, 2021
4
March, 2020
3
June, 2019
2
February, 2020
Available data
17
bigWig
16
bam
13
tsv
10
bed narrowPeak
9
bed bed3+
8
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
30
Homo sapiens
Biosample type
21
tissue
9
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
heart
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
30 results
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DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
aorta
4
1
1
2
1
tibial artery
2
1
1
ascending aorta
1
2
thoracic aorta
2
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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