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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
total RNA-seq
ChIP-seq
25
ATAC-seq
6
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
478
Transcription
31
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Date released
455
February, 2021
15
July, 2019
14
February, 2023
8
August, 2017
6
November, 2020
5
August, 2021
3
June, 2019
3
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
1
August, 2018
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
489
bigWig
485
bam
475
tsv
14
bed narrowPeak
13
bed bed3+
11
fastq
10
bigBed narrowPeak
6
bed bed3
6
bed broadPeak
6
bigBed broadPeak
4
bed bedgraph
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
523
Homo sapiens
Biosample type
473
tissue
29
in vitro differentiated cells
21
primary cell
1
stem cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
523
AMP
1
T1D
Genome assembly (visualization)
507
hg19
485
GRCh38
Lab
519
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
heart
artery
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
524 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
tissue
adipose tissue
382
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
1
subcutaneous abdominal adipose tissue
3
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in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
osteoblast
5
2
1
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
adult endothelial progenitor cell
1
+ See 3 more…
stem cell
mesenchymal stem cell
1
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