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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1737
ChIP-seq
1461
total RNA-seq
484
ATAC-seq
270
single cell RNA-seq
182
DNase-seq
RNA microarray
84
snATAC-seq
67
WGBS
54
pCHi-C
31
Hi-C
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
17
Transcription
Date released
30
July, 2019
6
August, 2017
Available data
17
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
tsv
4
fastq
Organism
36
Homo sapiens
Biosample type
25
tissue
11
primary cell
Organ
7
musculature of body
6
brain
6
epithelium
5
kidney
5
liver
4
connective tissue
4
pancreas
3
adipose tissue
heart
1
eye
1
pericardium
1
vasculature
Project
36
AMP
Genome assembly (visualization)
34
hg19
17
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
heart
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
36 results
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RRBS
small RNA-seq
tissue
skeletal muscle tissue
4
1
body of pancreas
2
liver
1
1
right lobe of liver
2
brain
1
+ See 13 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 6 more…
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