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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
17
small RNA-seq
13
RRBS
10
MeRIP-seq
8
Hi-C
4
WGBS
3
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
1
DNase-seq
Assay category
58
Transcription
17
DNA methylation
8
3D chromatin structure
6
DNA accessibility
Target of assay
8
control
5
nucleotide modification
Date released
565
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
226
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
69
bigWig
67
bam
58
tsv
15
bed bedMethyl
15
bigBed bedMethyl
5
bed bed3+
5
bed narrowPeak
4
hdf5
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
99
Homo sapiens
Biosample type
61
tissue
32
primary cell
6
cell line
Organ
heart
24
connective tissue
19
epithelium
18
brain
16
pancreas
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
99
AMP
Genome assembly (visualization)
80
hg19
64
GRCh38
Lab
89
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
7
inconsistent ontology term
organ_slims!
heart
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
99 results
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total RNA-seq
small RNA-seq
RRBS
MeRIP-seq
Hi-C
WGBS
ATAC-seq
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 20 more…
primary cell
osteoblast
4
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 16 more…
cell line
EndoC_BH1
6
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