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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
9
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
260
DNA accessibility
253
DNA binding
189
Transcription
57
DNA methylation
10
3D chromatin structure
Target of assay
219
histone
219
histone modification
114
broad histone mark
105
narrow histone mark
33
control
4
RNA binding protein
4
transcription factor
Date released
151
May, 2021
134
May, 2022
100
May, 2020
48
July, 2018
47
February, 2021
47
September, 2018
45
August, 2017
43
April, 2018
43
September, 2020
28
October, 2019
26
June, 2019
17
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2018
1
November, 2020
Available data
455
bigWig
451
bam
289
bed narrowPeak
289
fastq
153
zippedFastqFolder
120
tsv
103
bigBed narrowPeak
100
tagAlign
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
786
Homo sapiens
Biosample type
1262
tissue
786
primary cell
476
cell line
257
in vitro differentiated cells
10
stem cell
Organ
291
epithelium
265
pancreas
23
connective tissue
23
vasculature
21
blood vessel
20
kidney
18
vein
12
musculature of body
10
brain
8
blood
8
bodily fluid
7
liver
heart
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
445
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
430
hg19
338
GRCh38
Lab
412
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
heart
assay_title!
total RNA-seq
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
786 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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