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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
506
ChIP-seq
245
total RNA-seq
235
ATAC-seq
170
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
67
WGBS
50
pCHi-C
23
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
235
DNA accessibility
Date released
64
August, 2021
55
May, 2020
39
May, 2022
23
February, 2023
16
May, 2021
13
October, 2019
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
July, 2019
1
October, 2017
Available data
64
bed narrowPeak
64
xls
39
zippedFastqFolder
12
bigWig
12
fastq
12
tsv
3
bam
1
bed broadPeak
Organism
235
Homo sapiens
Biosample type
116
primary cell
103
tissue
16
cell line
Organ
81
pancreas
75
kidney
65
epithelium
35
artery
35
blood vessel
heart
35
vasculature
3
brain
1
eye
1
pituitary gland
1
skin of body
Project
175
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
hg19
187
GRCh38
Lab
98
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
11
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
22
inconsistent ontology term
organ_slims!
heart
assembly!
hg19
BIOSAMPLE
ASSAY
235 results
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ATAC-seq
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
macrophage
11
+ See 5 more…
tissue
kidney
75
islet of Langerhans
26
cerebellum (Hemisphere)
1
posterior cingulate cortex
1
cell line
EndoC_BH1
16
See all biosamples
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