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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1737
ChIP-seq
1461
total RNA-seq
484
ATAC-seq
270
single cell RNA-seq
182
DNase-seq
87
RNA microarray
84
snATAC-seq
67
WGBS
54
pCHi-C
31
Hi-C
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
67
DNA methylation
Date released
90
February, 2021
41
May, 2022
9
August, 2017
7
November, 2018
4
July, 2019
2
December, 2019
1
August, 2021
Available data
84
txt
41
zippedFastqFolder
17
fastq
12
bam
11
bed bedMethyl
11
bigBed bedMethyl
11
bigWig
8
tsv
Organism
153
Homo sapiens
Biosample type
106
tissue
47
primary cell
1
cell line
Organ
84
bone element
51
pancreas
48
epithelium
heart
7
adipose tissue
7
connective tissue
5
liver
2
blood vessel
2
kidney
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
107
AMP
47
HPAP
Genome assembly (visualization)
11
GRCh38
Lab
107
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
2
audit script error
organ_slims!
heart
BIOSAMPLE
ASSAY
154 results
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RNA microarray
WGBS
tissue
bone element
84
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 8 more…
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cell line
HepG2
1
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