Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1698
ChIP-seq
1456
total RNA-seq
483
ATAC-seq
269
single cell RNA-seq
149
DNase-seq
87
RNA microarray
83
snATAC-seq
66
WGBS
53
pCHi-C
25
Hi-C
15
small RNA-seq
14
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
269
Transcription
Target of assay
3
control
Date released
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
33
May, 2022
18
February, 2021
14
August, 2021
9
April, 2020
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
November, 2018
1
September, 2018
Available data
128
fastq
113
tsv
100
bam
100
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
269
Homo sapiens
Biosample type
187
primary cell
80
tissue
2
in vitro differentiated cells
Organ
heart
74
pancreas
70
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
musculature of body
Project
128
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
117
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
7
audit script error
organ_slims!
heart
musculature of body
BIOSAMPLE
ASSAY
269 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
64
lung
9
aorta
4
pulmonary artery
2
liver
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download