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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
890
total RNA-seq
462
ChIP-seq
136
DNase-seq
118
ATAC-seq
15
small RNA-seq
8
Hi-C
8
RRBS
4
FAIRE-seq
Assay category
905
Transcription
462
DNA binding
258
DNA accessibility
8
3D chromatin structure
8
DNA methylation
Target of assay
378
histone modification
377
histone
216
narrow histone mark
161
broad histone mark
81
transcription factor
17
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
155
October, 2019
122
June, 2019
116
July, 2018
78
May, 2019
48
July, 2019
45
October, 2018
40
November, 2019
38
May, 2022
36
December, 2017
36
May, 2021
33
February, 2023
18
April, 2019
17
November, 2018
14
March, 2020
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1540
bam
1538
bigWig
905
tsv
681
bed narrowPeak
407
bigBed narrowPeak
294
fastq
171
bed broadPeak
163
bed bed3+
135
bigBed broadPeak
105
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1635
Homo sapiens
Biosample type
1641
tissue
614
primary cell
466
cell line
296
in vitro differentiated cells
3
stem cell
Organ
482
connective tissue
424
adipose tissue
413
pancreas
268
liver
143
brain
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
60
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1639
AMP
2
T1D
Genome assembly (visualization)
1668
GRCh38
1641
hg19
Lab
1598
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
1641 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
31
1
42
2
1
1
liver
147
83
2
20
1
1
1
bone tissue
58
body of pancreas
2
26
2
4
2
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