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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
Hi-C
1
pCHi-C
Assay category
9
3D chromatin structure
Date released
March, 2020
3
October, 2022
2
August, 2021
2
November, 2019
2
October, 2019
1
August, 2018
Available data
3079
bam
2841
bigWig
1575
bed narrowPeak
1392
tsv
1269
fastq
933
bigBed narrowPeak
388
tagAlign
290
bed broadPeak
255
bigBed broadPeak
229
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
12
bed bed3
12
hic
10
bedpe bed3+
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
10
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
2
cell line
2
tissue
Organ
6
pancreas
4
epithelium
1
adipose tissue
1
connective tissue
heart
1
liver
Project
7
AMP
3
HPAP
Genome assembly (visualization)
8
hg19
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
3
inconsistent ontology term
organ_slims!
heart
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
March, 2020
BIOSAMPLE
ASSAY
10 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
tissue
islet of Langerhans
2
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