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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
74
total RNA-seq
31
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
88
Transcription
82
DNA accessibility
31
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
648
February, 2021
387
May, 2021
325
November, 2017
322
August, 2017
318
May, 2020
267
October, 2019
215
August, 2021
200
May, 2022
177
June, 2019
169
February, 2023
168
July, 2018
82
May, 2019
80
July, 2019
79
November, 2018
72
December, 2017
59
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
October, 2018
47
September, 2023
41
September, 2018
31
December, 2018
31
February, 2018
26
January, 2019
22
February, 2020
19
April, 2019
19
April, 2020
16
January, 2021
16
October, 2017
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
106
bed narrowPeak
64
xls
57
txt
47
bigWig
41
bam
31
tsv
16
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
214
Homo sapiens
Biosample type
137
tissue
40
cell line
35
in vitro differentiated cells
3
primary cell
Organ
130
kidney
heart
30
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
5
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
215
AMP
Genome assembly (visualization)
105
GRCh38
60
hg19
Lab
128
Katalin Susztak, Upenn
51
AMP-T2D consortium
32
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
heart
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
control
BIOSAMPLE
ASSAY
215 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
cell line
HepG2
9
14
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
3
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