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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
DNase-seq
36
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
155
DNA accessibility
36
DNA binding
1
3D chromatin structure
Target of assay
18
histone
18
histone modification
10
broad histone mark
9
control
9
transcription factor
8
narrow histone mark
1
RNA binding protein
Date released
136
June, 2019
19
August, 2017
15
December, 2017
9
November, 2018
6
October, 2019
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
1
May, 2022
Available data
2540
bam
2300
bigWig
1321
bed narrowPeak
1166
tsv
904
fastq
830
bigBed narrowPeak
288
tagAlign
244
bed broadPeak
209
bigBed broadPeak
195
bed bed3+
161
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
16
bedpe bed3+
14
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
195
Homo sapiens
Biosample type
164
tissue
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
36
limb
33
musculature of body
27
brain
heart
19
pancreas
18
ureter
15
connective tissue
7
liver
5
blood vessel
5
vasculature
4
artery
3
embryo
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
195
AMP
Genome assembly (visualization)
187
GRCh38
181
hg19
Lab
193
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
biosample_type!
primary cell
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
195 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
islet of Langerhans
11
+ See 35 more…
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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