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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
22
ChIP-seq
21
ATAC-seq
1
pCHi-C
Assay category
124
Transcription
22
DNA binding
21
DNA accessibility
Target of assay
22
histone
histone modification
16
transcription factor
12
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
601
February, 2021
312
November, 2017
206
August, 2021
191
August, 2017
168
May, 2021
167
May, 2020
136
June, 2019
120
July, 2018
102
October, 2019
87
November, 2018
81
February, 2023
66
May, 2022
63
December, 2017
57
July, 2019
53
March, 2020
51
November, 2019
47
September, 2023
44
October, 2018
35
December, 2018
23
February, 2018
23
January, 2019
22
February, 2020
19
April, 2020
18
May, 2019
15
May, 2023
11
October, 2017
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
April, 2019
5
December, 2019
5
March, 2019
4
March, 2023
August, 2018
1
August, 2022
1
October, 2022
Available data
127
bigWig
123
bam
118
tsv
5
tagAlign
4
bed narrowPeak
Organism
168
Homo sapiens
Biosample type
110
in vitro differentiated cells
primary cell
38
tissue
20
cell line
Organ
59
pancreas
24
epithelium
heart
2
embryo
1
connective tissue
1
thymus
Project
167
AMP
1
T1D
Genome assembly (visualization)
127
hg19
122
GRCh38
Lab
139
AMP-T2D consortium
29
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
organ_slims!
heart
biosample_type!
primary cell
target.investigated_as!
histone modification
month_released!
August, 2018
BIOSAMPLE
ASSAY
168 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
17
5
induced pluripotent stem cell
9
pancreatic PP cell
2
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
tissue
islet of Langerhans
36
pancreas
1
thymus
1
cell line
EndoC_BH1
4
16
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